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| ==== archimedes ====
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| '''archimedes''' is a 2D Quantum Monte Carlo simulator for semiconductor devices. New features for Fedora 17 include:
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| * Quantum Effective Potential modified
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| * Bohm Potential Model implemented
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| * Calibrated Bohm Model implemented
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| * Density Gradient corrected and tested
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| * Full effective potential model implemented
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| * New tests created
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| * Parabolic, Kane and Full band checked
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| * Full band Parameters for all materials
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| * Scattering phonons can be set to ON and OFF
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| * Support to Full Band approach
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| ==== gnome-chemistry-utils ====
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| '''gnome-chemistry-utils''' has been updated to the latest development release.
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| Changes include:
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| * GChem3d:
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| ** Import from InChI or SMILES.
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| ** Export to GChemPaint and GChemCalc.
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| ** Generates InChI, InChiKey and SMILES.
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| ** Add access to databases.
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| * GChemPaint:
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| ** Brackets inside a molecule accept a stoichiometry coefficient.
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| * GCrystal:
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| ** Use multiple selection in atoms and lines dialogs.
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| * GSpectrum:
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| ** Allow markup in combo boxes and axes titles.
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| * Goffice component:
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| ** Add support for crystal structures.
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| ==== gnuplot ====
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| In addition to a number of bug fixes, '''gnuplot''' 4.4.4 includes:
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| * boxxyerrors plot style now allows variable color
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| * splot with pm3d now allows variable rgb color
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| * "nonuniform matrix" indicates ascii data with explicit x, y
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| * columnhead(N) is a string-valued function, not a keyword
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| * Demarcate plots in svg output using <g id="Plot_#"><title>...
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| * xticlabels() works for binary data files as well as ascii
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| * "set key maxrows" now applies to 3D plots as well as 2D
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| ==== lapack ====
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| '''lapack''' has been updated to 3.4.0,
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| * xGEQRT: QR factorization (improved interface). xGEQRT is analogous to xGEQRF with a modified interface which enables better performance when the blocked reflectors need to be reused. The companion subroutines xGEMQRT apply the reflectors.
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| * xGEQRT3: recursive QR factorization. The recursive QR factorization enables cache-oblivious and enables high performance on tall and skinny matrices.
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| * xTPQRT: Communication-Avoiding QR sequential kernels. These subroutines are useful for updating a QR factorization and are used in sequential and parallel Communication Avoiding QR. These subroutines support the general case Triangle on top of Pentagon which includes as special cases so-called Triangle on top of Triangle and Triangle on top of Square. This is the right-looking version of the subroutines and the subroutines are blocked. The T matrices and the block size are part of the interface. The companion subroutines xTPMQRT apply the reflectors.
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| * LAPACKE - Standard C language APIs for LAPACK. Since LAPACK 3.3.0, LAPACK includes new C interfaces. With the LAPACK 3.4.0 release, LAPACKE is directly integrated within the LAPACK library and has been enriched by the full set of LAPACK subroutines.
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| Refer to http://www.netlib.org/lapack/lapack-3.4.0.html for more details.
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| ==== mapnik ====
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| Version 2.0.0 of '''mapnik''' is a major upgrade with numerous changes. Go to https://github.com/mapnik/mapnik/wiki/Release2.0.0 for complete details.
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| ==== mathomatic ====
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| Refer to http://www.mathomatic.org/NEWS for the complete list of changes in '''mathomatic''' 15.7.3.
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| ==== octave ====
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| The numerical computation language '''octave''' has been updated to 3.6.0. For details of the many new features please review http://www.gnu.org/software/octave/NEWS-3.6.html
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| ==== paraview ====
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| The parallel visualization application '''paraview''' has been updated to version 3.12.0. The release notes for this application may be found at http://www.kitware.com/news/home/browse/367?siteid=12
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| ==== paraview-data ====
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| Data files for ParaView
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| Old Version: 3.10.1 -> New Version: 3.12.0
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| Project site: (http://www.paraview.org/)
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| ==== paraview-devel ====
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| Old Version: -> New Version: 3.12.0
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| Project site: ()
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| ==== pspp ====
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| A program for statistical analysis of sampled data
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| Old Version: 0.6.2 -> New Version: 0.7.8
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| Project site: (http://www.gnu.org/software/pspp/)
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| ==== python-fiat ====
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| Generation of arbitrary order instances of the Lagrange elements
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| Old Version: 0.9.9 -> New Version: 1.0.0
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| Project site: (http://www.fenicsproject.org)
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| ==== qgis ====
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| A user friendly Open Source Geographic Information System
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| Old Version: 1.7.1 -> New Version: 1.7.3
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| Project site: (http://www.qgis.org)
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| ==== qgis-grass ====
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| GRASS Support Libraries for Quantum GIS
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| Old Version: 1.7.1 -> New Version: 1.7.3
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| Project site: (http://www.qgis.org)
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| ==== qgis-python ====
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| Python integration and plug-ins for Quantum GIS
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| Old Version: 1.7.1 -> New Version: 1.7.3
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| Project site: (http://www.qgis.org)
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| ==== qtgpsc ====
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| A client for the gpsd GPS server
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| Old Version: 0.2.3 -> New Version: 0.3.1
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| Project site: (http://www.navlost.eu/survey/gpsd/)
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| ==== R ====
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| The statistics package '''R''' has been updated to ''December Snowflakes''. Key changes include:
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| * NEW FEATURES:
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| ** Reference classes now keep a record of which fields are locked. $lock() with no arguments returns the names of the locked fields.
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| ** HoltWinters() reports a warning rather than an error for some optimization failures (where the answer might be a reasonable one).
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| ** tools::dependsOnPkg() now accepts the shorthand dependencies = "all".
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| ** parallel::clusterExport() now allows specification of an environment from which to export.
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| ** tempfile() on a Unix-alike now takes the process ID into account. This is needed with multicore (and as part of parallel) because the parent and all the children share a session temporary directory, and they can share the C random number stream used to produce the uniaue part. Further, two children can call tempfile() simultaneously.
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| ** Option print in Sweave's RweaveLatex() driver now emulates auto-printing rather than printing (which can differ for an S4 object by calling show() rather than print()).
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| ** filled.contour() now accepts infinite values: previously it might have generated invalid graphics files (e.g. containing NaN values).
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| * PACKAGE INSTALLATION:
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| ** R CMD INSTALL will now do a test load for all sub-architectures for which code was compiled (rather than just the primary sub-architecture).
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| * UTILITIES:
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| ** When checking examples under more than one sub-architecture, R CMD check now uses a separate directory examples_arch for each sub-architecture, and leaves the output in file pkgname-Ex_arch.Rout. Some packages expect their examples to be run in a clean directory ....
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| Refer to https://stat.ethz.ch/pipermail/r-announce/2011/000548.html for the complete list of changes and bug fixes.
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| ==== R-affyio ====
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| Tools for parsing Affymetrix data files
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| Old Version: 1.20.0 -> New Version: 1.22.0
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| Project site: (http://bioconductor.org/packages/release/bioc/html/affyio.html)
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| ==== R-Biobase ====
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| Base functions for Bioconductor
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| Old Version: 2.12.2 -> New Version: 2.14.0
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| Project site: (http://bioconductor.org/packages/release/bioc/html/Biobase.html)
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| ==== R-BufferedMatrix ====
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| A matrix data storage object method from bioconductor
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| Old Version: 1.16.0 -> New Version: 1.18.0
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| Project site: (http://bioconductor.org/packages/release/bioc/html/BufferedMatrix.html)
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| ==== R-GeneR ====
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| R for genes and sequences analysis
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| Old Version: 2.22.0 -> New Version: 2.24.0
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| Project site: (http://bioconductor.org/packages/release/bioc/html/GeneR.html)
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| ==== R-hgu95av2probe ====
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| Probe sequence data for microarrays of type hgu95av2
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| Old Version: 2.8.0 -> New Version: 2.9.0
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| Project site: (http://www.bioconductor.org/packages/release/data/annotation/html/hgu95av2probe.html)
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| ==== R-IRanges ====
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| Low-level containers for storing sets of integer ranges
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| Old Version: 1.10.4 -> New Version: 1.12.1
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| Project site: (http://bioconductor.org/packages/release/bioc/html/IRanges.html)
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| ==== R-java ====
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| R with Fedora provided Java Runtime Environment
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| Old Version: 2.13.1 -> New Version: 2.14.1
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| Project site: (http://www.r-project.org)
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| ==== R-java-devel ====
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| Development package for use with Java enabled R components
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| Old Version: 2.13.1 -> New Version: 2.14.1
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| Project site: (http://www.r-project.org)
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| ==== R-lmtest ====
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| Testing Linear Regression Models for R
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| Old Version: 0.9 -> New Version: 0.9.29
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| Project site: (http://cran.r-project.org/web/packages/lmtest/index.html)
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| ==== R-mvtnorm ====
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| Multivariate normal and T distribution R Package
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| Old Version: 0.9 -> New Version: 0.9.9991
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| Project site: (http://cran.r-project.org/web/packages/mvtnorm/index.html)
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| ==== roundup ====
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| Simple and flexible issue-tracking system
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| Old Version: 1.4.15 -> New Version: 1.4.18
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| Project site: (http://roundup.sourceforge.net/)
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| ==== R-qcc ====
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| '''R-qcc''' is new to Fedora. '''R-qcc''' is an '''R''' package which provides a rich set of quality control and statistical process control tools, including:
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| * Plot Shewhart quality control charts
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| * Plot Cusum and EMWA charts for continuous data
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| * Draw operating characteristic curves
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| * Perform process capability analysis
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| * Draw Pareto charts and Ishikawa diagrams
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| ==== R-qtl ====
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| Tools for analyzing QTL experiments
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| Old Version: 1.21.2 -> New Version: 1.22.21
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| Project site: (http://www.rqtl.org/)
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| ==== R-qvalue ====
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| Q-value estimation for false discovery rate control
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| Old Version: 1.26.0 -> New Version: 1.28.0
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| Project site: (http://bioconductor.org/packages/release/bioc/html/qvalue.html)
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| ==== R-RSQLite ====
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| SQLite database interface for R
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| Old Version: 0.9.1 -> New Version: 0.10.0
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| Project site: (http://cran.r-project.org/web/packages/RSQLite/index.html)
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| ==== R-systemfit ====
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| Simultaneous Equation Estimation R Package
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| Old Version: 1.1 -> New Version: 1.1.11
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| Project site: (http://r-forge.r-project.org/projects/systemfit/)
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| ==== R-zoo ====
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| Z's ordered observations for irregular time series
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| Old Version: 1.6 -> New Version: 1.7.6
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| Project site: (http://cran.r-project.org/web/packages/zoo/index.html)
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| ==== seaview ====
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| Graphical multiple sequence alignment editor
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| Old Version: 4.2.12 -> New Version: 4.3.2
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| Project site: (http://pbil.univ-lyon1.fr/software/seaview.html)
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| ==== tcd-utils ====
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| TCD (Tide Constituent Database) Utils
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| Old Version: 20080820 -> New Version: 20120115
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| Project site: (http://www.flaterco.com/xtide/)
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| ==== veusz ====
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| GUI scientific plotting package
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| Old Version: 1.12 -> New Version: 1.14
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| Project site: (http://home.gna.org/veusz/)
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| ==== vtk-examples ====
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| Examples for VTK
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| Old Version: 5.6.1 -> New Version: 5.8.0
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| Project site: (http://vtk.org/)
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| ==== vtk-testing ====
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| Testing programs for VTK
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| Old Version: 5.6.1 -> New Version: 5.8.0
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| Project site: (http://vtk.org/)
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| ==== wgrib ====
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| Manipulate, inventory and decode GRIB files
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| Old Version: 1.8.1.0h -> New Version: 1.8.1.2a
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| Project site: (http://www.cpc.ncep.noaa.gov/products/wesley/wgrib.html)
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| ==== wgrib2 ====
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| Manipulate, inventory and decode GRIB2 files
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| Old Version: 1.9.4 -> New Version: 1.9.5.1
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| Project site: (http://www.cpc.ncep.noaa.gov/products/wesley/wgrib2/)
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| ==== why ====
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| Software verification platform
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| Old Version: 2.29 -> New Version: 2.30
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| Project site: (http://why.lri.fr/)
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| ==== why-coq ====
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| Libraries for interfacing Coq with Why
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| Old Version: 2.29 -> New Version: 2.30
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| Project site: (http://why.lri.fr/)
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| ==== why-gwhy ====
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| IDE for Why software verification platform
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| Old Version: 2.29 -> New Version: 2.30
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| Project site: (http://why.lri.fr/)
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| ==== xtide ====
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| Calculate tide all over the world
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| Old Version: 2.12 -> New Version: 2.12.1
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| Project site: (http://www.flaterco.com/xtide/)
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| ==== xtide-common ====
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| Xtide common files
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| Old Version: 2.12 -> New Version: 2.12.1
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| Project site: (http://www.flaterco.com/xtide/)
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| ===304 packages checked, 91 differences.===
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| [[Category:Docs Project]] | | [[Category:Docs Project]] |
| [[Category:Draft documentation]] | | [[Category:Draft documentation]] |
| [[Category:Documentation beats]] | | [[Category:Documentation beats]] |
