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| = NeuroFedora SIG = | | = NeuroFedora SIG = |
| The NeuroFedora SIG's goal is to make Fedora the best platform for neuroscience and neuroimaging research.
| | [[File:NeuroFedoraLogo01.png|200px|frameless|right]] |
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| The self contained change request proposed by this SIG are detailed [[Changes/NeuroFedora | here]] | | The NeuroFedora SIG's goal is to provide neuroscience researchers (and enthusiasts!) a strong, easy to use, ready-made FOSS platform for their work. |
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| == Members ==
| | Please refer to the project documentation at https://neuro.fedoraproject.org for information on what we do, how we do it, why we do it, and how you can get help and join us! |
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| [[User:mhough|Morgan Hough (mhough)]] <[mailto:morgan.hough@gmail.com morgan.hough@gmail.com]>
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| [[User:Ignatenkobrain|Igor Gnatenko (ignatenkobrain)]] <[mailto:i.gnatenko.brain@gmail.com i.gnatenko.brain@gmail.com]>
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| [[User:alvesadrian|Adrian Alves (alvesadrian)]] <[mailto:alvesadrian@fedoraproject.org alvesadrian@fedoraporject.org]>
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| [[User:ankursinha| Ankur Sinha "FranciscoD" (ankursinha)]]
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| = NeuroFedora Packages =
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| == Interesting software waiting for being packaged ==
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| * [https://www.fenicsproject.org/ fenics - A finite element package]
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| == Work in progress ==
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| {|
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| ! Package !! Status !! Notes
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| | [http://martinos.org/mne/ python-mne] || {{result|inprogress|ignatenkobrain}} || {{bz|1276880}}
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| | [http://www.pydicom.org/ python-pydicom] || {{result|inprogress|ignatenkobrain}} || {{bz|1276837}}
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| | [http://matthew-brett.github.io/transforms3d/ python-transforms3d] || {{result|inprogress|ignatenkobrain}} || {{bz|1276910}}
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| | [http://nipy.org/nipy/ nipy-data] || {{result|inprogress|ignatenkobrain}} || {{bz|1276926}}
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| | [http://dipy.org python-dipy] || {{result|inprogress|ignatenkobrain}} || [https://github.com/neurofedora/python-dipy GitHub]
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| | [http://nipy.org/nitime python-nitime] || {{result|inprogress|ignatenkobrain}} || [https://github.com/neurofedora/python-nitime GitHub] i686 fails: [https://github.com/nipy/nitime/issues/137 Issue1], [https://github.com/nipy/nitime/issues/136 Issue2]
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| | [http://nipy.org/nipy/ python-nipy] || {{result|inprogress|ignatenkobrain}} || {{bz|1276938}}
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| | [https://github.com/nipy/nibabel python-nibabel] || {{result|inprogress|ignatenkobrain}} || {{bz|1276871}}
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| | [http://afni.nimh.nih.gov/afni/ AFNI] || {{result|inprogress|caesarae}} || depends on an old UI lib
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| | [http://www.fieldtriptoolbox.org/ FieldTrip] || {{result|inprogress|mhough}} ||
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| | [https://pypi.python.org/pypi/MNE MNE] || {{result|inprogress|ignatenkobrain}} ||
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| | [http://www.mrtrix.org MRTrix3 - MRTrix3 is a analysis package for diffusion data] || {{result|inprogress|caesarae}} ||
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| | [http://www.nest-simulator.org nest - nest is a simulator for spiking neural networks] || [[User:ankursinha|ankursinha]] || WIP || depends on [[rhbug:1273579 | review request]]
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| | [https://www.neuron.yale.edu/neuron/ nrn - nrn is a neural simulator package] || [[User:ankursinha|ankursinha]] || WIP || depends on [[rhbug:1249094 | review request]]
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| | [http://briansimulator.org python-brian2 - Brian is a simulator for spiking neural networks] || [[User:ankursinha|ankursinha]] || WIP || depends on [[rhbug:1098754 | review request]]
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| | [https://pythonhosted.org/neo/ python-neo - neo is a package for electrophysiology] || [[User:ankursinha|ankursinha]] || WIP || depends on [[rhbug:1150099 | review request]]
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| | [http://neuralensemble.org/PyNN/ python-pynn - pynn is a simulator for spiking neural networks] || [[User:ankursinha|ankursinha]] || WIP || depends on [[rhbug:1150105 | review request]]
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| | [http://www.fil.ion.ucl.ac.uk/spm/ SPM] || [[User:mhough | mhough]] || WIP ||
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| |}
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| == New packages ==
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| When submitting a new neuro-related package for review, please add "Blocks: [[rhbug:fedora-neuro|fedora-neuro]]" to your review-request. After the review has been granted don't forget to remove it, when filing the SCM-request, please.
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| When you are filing your SCM-admin-request, you should make sure to request InitialCC for "fedora-neuro".
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| Example:
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| <pre>
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| New Package SCM Request
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| =======================
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| Package Name: pkgname
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| Short Description: summary of package
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| Owners: foo bar
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| Branches: f21 f22 f23 el6 el7
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| InitialCC: fedora-neuro-sig
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| </pre>
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| == Packages waiting for your review ==
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| You can find them on the {{bz|fedora-neuro}}.
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| We would be glad, if you would take one or a few. :)
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| == Existing packages ==
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| You can't find the existing [https://admin.fedoraproject.org/pkgdb/users/packages/neurofedora-sig neurofedora-related packages on the PkgDB] yet but we are working on it.
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| == Categories ==
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| There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general. The classification of packages that [neuro.debian.net|NeuroDebian] uses is as follows:
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| <pre>
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| *Packages for Distributed Computing
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| *Packages for Electrophysiology
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| *Packages for Magnetic Reasonance Imaging
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| *Packages for Modeling of neural systems
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| *Packages for Neuroscience Datasets
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| *Packages for Neuroscience Education
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| *Packages for Psychophysics
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| </pre>
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| = What are we going to do? =
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| We are first planning to try and match as many of the packages from the debian-based neurodebian project as possible excluding the debian-specific packaging related tools and any others for which licensing issues are a problem. The second phase would be to publish a paper outlining the work here again following the neurodebian project paper to give the project some exposure in the research community. A parallel track to these is to continue to publish research using the tools available in NeuroFedora.
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| = Participation =
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| There is no formal process for participating; joining the mailing list, hanging out on IRC, or participating in meetings are all great ways to get involved.
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| A little self-introduction on the mailing list would be nice, too. And, if you want to, add yourself to [[SIGs/NeuroFedora#Members | our members-section above]].
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| == Mailing list ==
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| * Join: {{fplist|neuro-sig}}
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| * Archives: [http://lists.fedoraproject.org/pipermail/neuro-sig/ read]
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| == IRC ==
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| We hang out on irc.freenode.net at '''{{fpchat|#fedora-neuro}}'''.
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| == Meetings ==
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| We shall have them, and see how it goes.
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| more to come soon.
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| [[Category:SIGs]] | | [[Category:SIGs]] |
| [[Category:Fedora special-interest groups]] | | [[Category:Fedora special-interest groups]] |
