From Fedora Project Wiki
 
(20 intermediate revisions by 3 users not shown)
Line 3: Line 3:
Fedora Medical Special Interest Group (SIG) is to enable a medical practice, the research, life sciences, bioinformatics and imaging into Fedora, and democratize the technologies for everyone.
Fedora Medical Special Interest Group (SIG) is to enable a medical practice, the research, life sciences, bioinformatics and imaging into Fedora, and democratize the technologies for everyone.
We prepares the packages associated with them.
We prepares the packages associated with them.
Some sessions were moved to [https://fedoraproject.org/wiki/Medical/Memo the Medical SIG's memo page].


== Join Fedora Medical SIG and Contribute ==
== Join Fedora Medical SIG and Contribute ==
Line 10: Line 8:
=== Communication tools ===
=== Communication tools ===


* Mailing list: Go to [https://lists.fedoraproject.org/admin/lists/medical-sig.lists.fedorahosted.org/ the mailing list page], and subscribe. Mailing list address: medical-sig@lists.fedorahosted.org .
* Mailing list: Go to [https://lists.fedoraproject.org/admin/lists/medical-sig.lists.fedorahosted.org/ the mailing list page], and subscribe. Mailing list address: '''medical-sig@lists.fedorahosted.org''' .
* IRC: #fedora-medical at [https://freenode.net/ freenode].
* IRC: '''#fedora-medical''' at [https://freenode.net/ freenode].
* Issue tracker and file management: https://pagure.io/fedora-medical The issue data was migrated from the old tracker Trac to the Pagure fedora-medical. If you want to open an existing package specific issue, you can use Bugzilla.
* Issue tracker and file management: https://pagure.io/fedora-medical The issue data was migrated from the old tracker Trac to the Pagure fedora-medical. If you want to open an existing package specific issue, you can use Bugzilla.


Please contact us on medical-sig@lists.fedorahosted.org if you need some helps. Subscribing the mailing list is encouraged.
Please contact us on '''medical-sig@lists.fedorahosted.org''' if you need some helps. Subscribing the mailing list is encouraged.


=== Interested People (Please add yourself) ===
=== Interested People (Please add yourself) ===
Line 20: Line 18:
{| class="wikitable"
{| class="wikitable"
|-
|-
| [[user:susmit | Susmit Shannigrahi]] || [[user:Cwickert | Christoph Wickert]]
| [[user:susmit | Susmit Shannigrahi]] ||  
|-
|-
| [[user:luisibanez | Luis Ibanez ]] || [[user:iosifidis | Efstathios Iosifidis ]]
| [[user:luisibanez | Luis Ibanez ]] || [[user:iosifidis | Efstathios Iosifidis ]]
Line 30: Line 28:
| [[user:mrceresa | Mario Ceresa ]] || [[user:dahudje | Jérôme Velut ]]
| [[user:mrceresa | Mario Ceresa ]] || [[user:dahudje | Jérôme Velut ]]
|-
|-
| || [[user:yevlempy | Harsh Verma]]
| [[user:mhough | Morgan Hough ]] || [[user:yevlempy | Harsh Verma]]
|-
|-
| [[user:Drifter | Marcus Lines ]] || [[user:zoltanh721 | Zoltan Hoppar ]]
| [[user:Drifter | Marcus Lines ]] || [[user:zoltanh721 | Zoltan Hoppar ]]
Line 55: Line 53:
|-
|-
| [[user:jaruga | Jun Aruga ]] || [[user:sagitter | Antonio Trande ]]  
| [[user:jaruga | Jun Aruga ]] || [[user:sagitter | Antonio Trande ]]  
|-
| [[user:aekoroglu | Ali Erdinc Koroglu ]] ||
|-
|-
|}
|}


== Tasks ==
== Packages ==


=== Fedora medical packages by category ===
=== Tasks - Fedora medical packages by category ===


{| class="wikitable"
{| class="wikitable"
|-
|-
! Category !! Description
! Category !! Description !! [https://koschei.fedoraproject.org/groups Koschei group]
|-
| Biology || Bioinformatics. Computing biology. Working in progress.
|-
|-
| [[Medical/Tasks/Dental|Dental]] ||
| All || All the package managed by Medical SIG. || [https://koschei.fedoraproject.org/groups/medical-sig?untracked=1 medical-sig]  
|-
|-
| [[Medical/Tasks/Hospital|Hospital]] || Hospital information systems. General Practitioner's work-flow.
| Biology || Bioinformatics, Computing biology, Genomics || [https://koschei.fedoraproject.org/groups/biology?untracked=1 biology]
|-
|-
| [[Medical/Tasks/Imaging|Imaging]] ||
|-
| [[Medical/Tasks/Misc|Misc]] ||
|-
| [[Medical/Tasks/SpeechAnalysis|Speech Analysis]] ||
|}
|}


When creating new category, please consider the name with [https://blends.debian.org/med/tasks/ Debian Med team's tasks].
When creating a new category, please consider the name with [https://blends.debian.org/med/tasks/ Debian Med team's tasks].
We are trying to create the package groups "medical-sig" and "biology" for Fedora Medical SIG by asking it on devel mailing list [https://lists.fedoraproject.org/archives/list/devel@lists.fedoraproject.org/thread/5RILJ4D3AU5LGDPQ3IFBVNDFEO62QPWO/ here]. You can check the current groups [https://koschei.fedoraproject.org/groups here].
 
If you are interested in neuroscience (or neurobiology), [[SIGs/NeuroFedora|NeuroFedora SIG]] ([https://koschei.fedoraproject.org/groups/neuro-sig Koschei group]) is the place.
 
If you are interested in science, [https://fedoraproject.org/wiki/Category:SciTech_SIG SciTech SIG] ([https://koschei.fedoraproject.org/groups/scitech_sig Koschei group]) is the place.
 
=== Copr ===
 
Some of the medical packages are available on Copr.
 
* [https://copr.fedorainfracloud.org/coprs/loveshack/livhpc/ loveshack/livhpc]: Thanks Dave!
 
== Fedora Packaging Guidelines for Medical ==
 
Main article: [https://fedoraproject.org/wiki/Medical/Packaging Fedora Packaging Guidelines for Medical]
 
== COVID-19 ==
 
Main article: [https://fedoraproject.org/wiki/Medical/COVID-19 Medical/COVID-19]


=== Package review Requests ===
As many people are interested in the topic now, we created the page for people who want to contribute to the open source projects or do RPM packaging.


* PACKAGED! [https://bugzilla.redhat.com/show_bug.cgi?id=539387 InsightToolkit] - Medical imaging processing library
== Memo ==
* PACKAGED! [https://bugzilla.redhat.com/show_bug.cgi?id=573910 DCMTK] - A collection of libraries implementing large parts of the DICOM standard
* [https://bugzilla.redhat.com/show_bug.cgi?id=827723 GNU Health] - The free Health and Hospital Information System
* PACKAGED! [https://bugzilla.redhat.com/show_bug.cgi?id=888301 Orthanc] - Lightweight, RESTful DICOM server
* [http://openeeg.sourceforge.net/doc/ OpenEEG] - Open source EEG
* [http://sourceforge.net/projects/ecgtoolkit-cs/ Open source ECG]
* [http://sourceforge.net/projects/nplabs/files/libomron/0.9.0/ LibOmron, Omron usb devices driver]
* [http://sourceforge.net/projects/upaopendental/ UPAOpenDental - Dental software - new]
* PACKAGED! [https://bugzilla.redhat.com/show_bug.cgi?id=962490] - Octave dicom package


== Meeting notes ==
Main article: [https://fedoraproject.org/wiki/Medical/Memo Medical/Memo]


* [http://meetbot.fedoraproject.org/fedora-meeting/2010-01-19/fedora-meeting.2010-01-19-18.01.html Meeting on Jan 10th 2010]
Some rarely used, experimental or deprecated sections are managed at [https://fedoraproject.org/wiki/Medical/Memo the Medical SIG's memo page].
* [http://meetbot.fedoraproject.org/fedora-meeting/2013-09-03/fedora_medical_2013-09-03.2013-09-03-12.03.html Meeting on September 03 2013]


[[Category:SIGs]]
[[Category:SIGs]]
[[Category:Fedora special-interest groups]]
[[Category:Fedora special-interest groups]]

Latest revision as of 07:23, 19 May 2022

Fedora Medical Special Interest Group (SIG) is to enable a medical practice, the research, life sciences, bioinformatics and imaging into Fedora, and democratize the technologies for everyone. We prepares the packages associated with them.

Join Fedora Medical SIG and Contribute

Communication tools

  • Mailing list: Go to the mailing list page, and subscribe. Mailing list address: medical-sig@lists.fedorahosted.org .
  • IRC: #fedora-medical at freenode.
  • Issue tracker and file management: https://pagure.io/fedora-medical The issue data was migrated from the old tracker Trac to the Pagure fedora-medical. If you want to open an existing package specific issue, you can use Bugzilla.

Please contact us on medical-sig@lists.fedorahosted.org if you need some helps. Subscribing the mailing list is encouraged.

Interested People (Please add yourself)

Susmit Shannigrahi
Luis Ibanez Efstathios Iosifidis
Ben Lambrechts Mary-Anne Wolf
Sebastian Hilbert Yumas Hankouri
Mario Ceresa Jérôme Velut
Morgan Hough Harsh Verma
Marcus Lines Zoltan Hoppar
Daniel VanStone Gareth John
Theodore Papadopoulo Mary-Anne Wolf
Praveen Kumar Robert Beatty
Leon Keijser James Regis
Kalpa Pathum Welivitigoda Prabin Kumar Datta
Tom Wroblewski Arnaud Gelas
David Deutschmann Arnold Laurinaria
Michel Alexandre Salim Siddharth Waikar
Sébastien Jodogne Simon Slater
Marcel Ribeiro Dantas Michael Osburn
Jun Aruga Antonio Trande
Ali Erdinc Koroglu

Packages

Tasks - Fedora medical packages by category

Category Description Koschei group
All All the package managed by Medical SIG. medical-sig
Biology Bioinformatics, Computing biology, Genomics biology

When creating a new category, please consider the name with Debian Med team's tasks.

If you are interested in neuroscience (or neurobiology), NeuroFedora SIG (Koschei group) is the place.

If you are interested in science, SciTech SIG (Koschei group) is the place.

Copr

Some of the medical packages are available on Copr.

Fedora Packaging Guidelines for Medical

Main article: Fedora Packaging Guidelines for Medical

COVID-19

Main article: Medical/COVID-19

As many people are interested in the topic now, we created the page for people who want to contribute to the open source projects or do RPM packaging.

Memo

Main article: Medical/Memo

Some rarely used, experimental or deprecated sections are managed at the Medical SIG's memo page.

Retrieved from "https://fedoraproject.org/w/index.php?title=SIGs/Medical&oldid=645357"