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* [http://samtools.sourceforge.net/ SAMtools] - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. | |||
* [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool | * [http://maq.sourceforge.net/bwa-man.shtml bwa] - Burrows-Wheeler Alignment Tool | ||
* [http://emboss.sourceforge.net/ EMBOSS package] - Hundreds of useful, well documented applications for molecular sequence and other analyses. | * [http://emboss.sourceforge.net/ EMBOSS package] - Hundreds of useful, well documented applications for molecular sequence and other analyses. | ||
Revision as of 21:30, 10 July 2009
- SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments.
- bwa - Burrows-Wheeler Alignment Tool
- EMBOSS package - Hundreds of useful, well documented applications for molecular sequence and other analyses.
- Staden package - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
- NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.