From Fedora Project Wiki
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* [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats. | * [http://www.chevreux.org/projects_mira.html MIRA] - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats. | ||
* [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI-BLAST and other tools] - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. | * [ftp://ftp.ncbi.nih.gov/toolbox/ NCBI-BLAST and other tools] - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. | ||
* [http://samtools.sourceforge.net/ SAMtools] - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files. | |||
* [http://staden.sourceforge.net/ Staden] - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK | * [http://staden.sourceforge.net/ Staden] - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK | ||
* [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows. | * [http://www.mygrid.org.uk/tools/taverna/ Taverna] - Tool for automation of experimental workflows. | ||
Revision as of 22:03, 28 July 2009
- bwa - Burrows-Wheeler Alignment Tool.
- EMBOSS - Hundreds of useful, well documented applications for molecular sequence and other analyses.
- MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
- NCBI-BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
- SAMtools - SAM (Sequence Alignment/Map) format is a generic format for storing large nucleotide sequence alignments. Tools for sorting, merging etc. sam format files.
- Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
- Taverna - Tool for automation of experimental workflows.