User:Alexlan

Alex Lancaster

Mainly interested in packaging bioinformatics tools for Fedora. Member of SIGs/SciTech .

• List of packages I own from PackageDB
• Specs and SRPMs for packages-in-review on alexlan.fedorapeople.org
• Fedora Account System: alexlan
• I am also an RPM Fusion maintainer.

Useful links

• My Watchlist
• Common Rpmlint issues , Packaging:Python , Packaging:Perl, Packaging:Perl , NewPackageProcess , Infrastructure/UpdatesSystem/Bodhi-info-DRAFT, Branch Freeze Policy
• Track my Perl CPAN packages upstream: http://perl.biggerontheinside.net/users/show/alexlan
• RPM macros and conditional builds: http://rpm.org/api/4.4.2.2/conditionalbuilds.html

Bioinformatics packages

In repository

• bioperl (review request ), bioperl-run (review request ) [in repo] and dependencies:
• (Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
  • perl-SVG (review request ) [in repo]
  • perl-GD-SVG (review request ) [in repo]
  • perl-XML-Writer (review request ) [in repo]
  • perl-Text-Shellwords (review request ) [in repo]
  • perl-Graph (review request ) [in repo]
• (These are newly packaged by me:)
  • perl-Math-Derivative (review request ) [in repo]
  • perl-Math-Spline (review request ) [in repo]
  • perl-Convert-Binary-C (review request ) [in repo]
  • perl-XML-XPathEngine (review request ) [in repo]
  • perl-XML-DOM-XPath (review request ) [in repo]
  • perl-SVG-Graph (review request ) [in repo]
  • perl-PostScript (review request ) [in repo]
  • perl-Data-Stag (review request ) [in repo]
  • perl-AcePerl (review request ) [in repo]
  • perl-Bio-ASN1-EntrezGene (review request ) [in repo]
  • perl-AutoClass (review request ) [in repo]
• (Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
• perl-Bio-Graphics (review request) [in repo] formerly part of bioperl, now a standalone CPAN module as of bioperl 1.6.
• biopython (review request ) [in repo]
• wise2 (review request ) [in repo]
• PyPop - Python for Population Genomics (I am the primary upstream developer) (review request) [in repo]

To be packaged

• Swarm - agent-based modelling toolkit

Other packages

• picard (MusicBrainz tagger) (review request ) [in repo]
• libdiscid - dependency for libmusicbrainz/python-musicbrainz2 and also used for picard (review request ) [in repo]
• ESS : Emacs Speaks Statistics (emacs-ess) Emacs add-on package to interface with the statistical packages R, amongst others. (review request ) [in repo]
• bibus bibliography manager for OpenOffice.org (review request ) [in repo]
• latex2emf (review request ), small package to generate an EMF file from LaTeX source, prerequisite for OOoLaTeX extension (see below) [in repo]
• OOoLatex (review request ) Extension for OpenOffice.org to permit the entering and rendering of LaTeX equations directly in Draw/Impress documents. Depends on libEMF. [in repo]

Other packages I'm interested in maintaining, or helping to maintain

• SAGE: the open-source computer algebra/mathematics framework (this is a huge package with many dependencies and will require work from multiple maintainers).
• Bioconductor: bioinformatics packages for R. Many of these packages are now included in Fedora, Pingou is trying to make this a Feature.
• E-Cell: GPL-licensed cell simulator for systems biology