From Fedora Project Wiki
(bwa now in Fedora) |
mNo edit summary |
||
| Line 1: | Line 1: | ||
* [http://autodock.scripps.edu/ Autodock] Suite of automated molecular docking tools | * [http://autodock.scripps.edu/ Autodock] Suite of automated molecular docking tools | ||
* [http://vina.scripps.edu/ Autodock Vina] Tool for drug discovery, molecular docking and virtual screening | * [http://vina.scripps.edu/ Autodock Vina] Tool for drug discovery, molecular docking and virtual screening | ||
* [http://www.cytoscape.org/ Cytoscape] - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways | * [http://www.cytoscape.org/ Cytoscape] - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways | ||
* [http://hannonlab.cshl.edu/fastx_toolkit/index.html FASTX-Toolkit] - Command line tools for Short-Reads FASTA/FASTQ files preprocessing ([https://bugzilla.redhat.com/show_bug.cgi?id=597307 Review Request]) | * [http://hannonlab.cshl.edu/fastx_toolkit/index.html FASTX-Toolkit] - Command line tools for Short-Reads FASTA/FASTQ files preprocessing ([https://bugzilla.redhat.com/show_bug.cgi?id=597307 Review Request]) | ||
Revision as of 21:51, 24 November 2010
- Autodock Suite of automated molecular docking tools
- Autodock Vina Tool for drug discovery, molecular docking and virtual screening
- Cytoscape - Platform for the analysis and visualization of complex networks, in particular molecular interaction networks and biological pathways
- FASTX-Toolkit - Command line tools for Short-Reads FASTA/FASTQ files preprocessing (Review Request)
- GENtle - DNA restriction analysis and cloning tool similar to VectorNTI
- Integrative Genomics Viewer - java-based graphical genomics viewer (licensed under GPLv2)
- MIRA - Genome fragment assembler for sequencing projects classified as 'hard' due to high number of similar repeats.
- NCBI BLAST and other tools - The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences.
- NCBI C Toolkit - NCBI libraries and tools for biology applications srpm here
- NCBI C++ Toolkit - a new generation of NCBI libraries and tools for biology
- pyQPCR - qPCR analysis tool
- Staden - sequence handling and analysis software developed at the Medical Research Council Laboratory of Molecular Biology, Cambridge, UK
- Taverna - Tool for automation of experimental workflows.