From Fedora Project Wiki
m (→Bioinformatics packages: Fix list) |
|||
| Line 18: | Line 18: | ||
* [http://www.bioperl.org/ bioperl] ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo] and dependencies: | * [http://www.bioperl.org/ bioperl] ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234573 review request] ), bioperl-run ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=236877 review request] ) [in repo] and dependencies: | ||
*(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built) | *(Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built) | ||
*perl-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232193 review request] ) [in repo] | **perl-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232193 review request] ) [in repo] | ||
*perl-GD-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232408 review request] ) [in repo] | **perl-GD-SVG ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=232408 review request] ) [in repo] | ||
*perl-XML-Writer ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233585 review request] ) [in repo] | **perl-XML-Writer ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233585 review request] ) [in repo] | ||
*perl-Text-Shellwords ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233584 review request] ) [in repo] | **perl-Text-Shellwords ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233584 review request] ) [in repo] | ||
*perl-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233588 review request] ) [in repo] | **perl-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233588 review request] ) [in repo] | ||
*(These are newly packaged by me:) | *(These are newly packaged by me:) | ||
*perl-Math-Derivative ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233741 review request] ) [in repo] | **perl-Math-Derivative ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233741 review request] ) [in repo] | ||
*perl-Math-Spline ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233742 review request] ) [in repo] | **perl-Math-Spline ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233742 review request] ) [in repo] | ||
*perl-Convert-Binary-C ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233844 review request] ) [in repo] | **perl-Convert-Binary-C ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233844 review request] ) [in repo] | ||
*perl-XML-XPathEngine ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233845 review request] ) [in repo] | **perl-XML-XPathEngine ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233845 review request] ) [in repo] | ||
*perl-XML-DOM-XPath ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233846 review request] ) [in repo] | **perl-XML-DOM-XPath ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233846 review request] ) [in repo] | ||
*perl-SVG-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233848 review request] ) [in repo] | **perl-SVG-Graph ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=233848 review request] ) [in repo] | ||
*perl-Post<code></code>Script ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234454 review request] ) [in repo] | **perl-Post<code></code>Script ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234454 review request] ) [in repo] | ||
*perl-Data-Stag ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234457 review request] ) [in repo] | **perl-Data-Stag ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234457 review request] ) [in repo] | ||
*perl-Ace<code></code>Perl ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234569 review request] ) [in repo] | **perl-Ace<code></code>Perl ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234569 review request] ) [in repo] | ||
*perl-Bio-ASN1-Entrez<code></code>Gene ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234571 review request] ) [in repo] | **perl-Bio-ASN1-Entrez<code></code>Gene ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234571 review request] ) [in repo] | ||
*perl- | **perl-AutoClass ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=234568 review request] ) [in repo] | ||
*(Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers) | *(Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers) | ||
* [http://www.biopython.org biopython] ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=235989 review request] ) [in repo] | * [http://www.biopython.org biopython] ([https://bugzilla.redhat.com/bugzilla/show_bug.cgi?id=235989 review request] ) [in repo] | ||
Revision as of 06:24, 10 August 2008
Alex Lancaster
Mainly interested in packaging bioinformatics tools for Fedora. Member of SIGs/SciTech .
- specs and SRPMs for packages-in-review on alexlan.fedorapeople.org
- Fedora Account System: alexlan
Useful links
- PackageMaintainers/CommonRpmlintIssues , Packaging/Python , Packaging/Perl, PackagingDrafts/Perl , PackageMaintainers/NewPackageProcess , Infrastructure/UpdatesSystem/Bodhi-info-DRAFT
- Track my upstream CPAN packages: http://fedora.biggerontheinside.net/perl/alexlan.html
Bioinformatics packages
- bioperl (review request ), bioperl-run (review request ) [in repo] and dependencies:
- (Note that the below were based upon packages originally submitted by HunterMatthews that were reviewed and approved but never built)
- perl-SVG (review request ) [in repo]
- perl-GD-SVG (review request ) [in repo]
- perl-XML-Writer (review request ) [in repo]
- perl-Text-Shellwords (review request ) [in repo]
- perl-Graph (review request ) [in repo]
- (These are newly packaged by me:)
- perl-Math-Derivative (review request ) [in repo]
- perl-Math-Spline (review request ) [in repo]
- perl-Convert-Binary-C (review request ) [in repo]
- perl-XML-XPathEngine (review request ) [in repo]
- perl-XML-DOM-XPath (review request ) [in repo]
- perl-SVG-Graph (review request ) [in repo]
- perl-Post
Script (review request ) [in repo] - perl-Data-Stag (review request ) [in repo]
- perl-Ace
Perl (review request ) [in repo] - perl-Bio-ASN1-Entrez
Gene (review request ) [in repo] - perl-AutoClass (review request ) [in repo]
- (Note other deps originally by Hunter: perl-Heap, perl-MIME-Lite, perl-SOAP-Lite were not orphaned, but picked up by other maintainers)
- biopython (review request ) [in repo]
- wise2 (review request ) [in repo]
- PyPop - Python for Population Genomics (I am the primary upstream developer)
- Swarm - agent-based modelling toolkit
Other packages
- picard (MusicBrainz tagger) (review request ) [in repo]
- libdiscid - dependency for libmusicbrainz/python-musicbrainz2 and also used for picard (review request ) [in repo]
- ESS : Emacs Speaks Statistics (emacs-ess) Emacs add-on package to interface with the statistical packages R, amongst others. (review request ) [in repo]
- bibus bibliography manager for Open
Office.org (review request ) [in repo] - latex2emf (review request ), small package to generate an EMF file from LaTeX source, prerequisite for OOoLaTeX extension (see below) [in repo]
- OOoLatex (review request ) Extension for OpenOffice.org to permit the entering and rendering of LaTeX equations directly in Draw/Impress documents. Depends on libEMF. [in repo]
Ready for review
Other packages I'm interested in maintaining, or helping to maintain
- SAGE: the open-source computer algebra/mathematics framework (this is a huge package with many dependencies and will require work from multiple maintainers).
- Bioconductor: bioinformatics packages for R. Many of these packages are now included in Fedora, Pingou is trying to make this a Feature.