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== Interesting software waiting for being packaged == | == Interesting software waiting for being packaged == | ||
* [https://www.fenicsproject.org/ fenics - A finite element package] | * [https://www.fenicsproject.org/ fenics - A finite element package] | ||
== Work in progress == | == Work in progress == | ||
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== New packages == | == New packages == | ||
When submitting a new neuro-related package for review, please add "Blocks: [[rhbug: | When submitting a new neuro-related package for review, please add "Blocks: [[rhbug:fedora-neuro|fedora-neuro]]" to your review-request. After the review has been granted don't forget to remove it, when filing the SCM-request, please. | ||
When you are filing your SCM-admin-request, you should make sure to request InitialCC for " | When you are filing your SCM-admin-request, you should make sure to request InitialCC for "fedora-neuro". | ||
Example: | Example: | ||
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Owners: foo bar | Owners: foo bar | ||
Branches: f21 f22 f23 el6 el7 | Branches: f21 f22 f23 el6 el7 | ||
InitialCC: | InitialCC: fedora-neuro-sig | ||
</pre> | </pre> | ||
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== Categories == | == Categories == | ||
There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general. The classification that NeuroDebian uses is as follows: | There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general. The classification of packages that [neuro.debian.net|NeuroDebian] uses is as follows: | ||
<pre> | <pre> | ||
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= What are we going to do? = | = What are we going to do? = | ||
We are first planning to match packages from the debian-based neurodebian project excluding the debian packaging related tools. The second phase would be to publish a paper outlining the work here again following the neurodebian project paper. | We are first planning to try and match as many of the packages from the debian-based neurodebian project as possible excluding the debian-specific packaging related tools and any others for which licensing issues are a problem. The second phase would be to publish a paper outlining the work here again following the neurodebian project paper to give the project some exposure in the research community. A parallel track to these is to continue to publish research using the tools available in NeuroFedora. | ||
= Participation = | = Participation = | ||
Revision as of 18:30, 5 November 2015
NeuroFedora SIG
The NeuroFedora SIG's goal is to make Fedora the best platform for neuroscience and neuroimaging research.
Members
Morgan Hough (mhough) <morgan.hough@gmail.com>
Igor Gnatenko (Ignatenkobrain) <i.gnatenko.brain@gmail.com>
Adrian Alves (alvesadrian) <alvesadrian@fedoraporject.org>
Ankur Sinha "FranciscoD" (ankursinha)
NeuroFedora Packages
Interesting software waiting for being packaged
Work in progress
| Package | Status | Notes | |
|---|---|---|---|
| python-mne | RHBZ #1276880 | ||
| python-pydicom | RHBZ #1276837 | ||
| python-transforms3d | RHBZ #1276910 | ||
| nipy-data | RHBZ #1276926 | ||
| python-dipy | GitHub | ||
| python-nitime | GitHub i686 fails: Issue1, Issue2 | ||
| python-nipy | RHBZ #1276938 | ||
| python-nibabel | RHBZ #1276871 | ||
| AFNI |  caesarae |
depends on an old UI lib | |
| FieldTrip | |||
| MNE | |||
| MRTrix3 - MRTrix3 is a analysis package for diffusion data | caesarae |
||
| nest - nest is a simulator for spiking neural networks | ankursinha | WIP | depends on review request |
| nrn - nrn is a neural simulator package | ankursinha | WIP | depends on review request |
| python-brian2 - Brian is a simulator for spiking neural networks | ankursinha | WIP | depends on review request |
| python-neo - neo is a package for electrophysiology | ankursinha | WIP | depends on review request |
| python-pynn - pynn is a simulator for spiking neural networks | ankursinha | WIP | depends on review request |
| SPM | mhough | WIP |
New packages
When submitting a new neuro-related package for review, please add "Blocks: fedora-neuro" to your review-request. After the review has been granted don't forget to remove it, when filing the SCM-request, please.
When you are filing your SCM-admin-request, you should make sure to request InitialCC for "fedora-neuro".
Example:
New Package SCM Request ======================= Package Name: pkgname Short Description: summary of package Owners: foo bar Branches: f21 f22 f23 el6 el7 InitialCC: fedora-neuro-sig
Packages waiting for your review
You can find them on the RHBZ #fedora-neuro.
We would be glad, if you would take one or a few. :)
Existing packages
You can't find the existing neurofedora-related packages on the PkgDB yet but we are working on it.
Categories
There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general. The classification of packages that [neuro.debian.net|NeuroDebian] uses is as follows:
*Packages for Distributed Computing *Packages for Electrophysiology *Packages for Magnetic Reasonance Imaging *Packages for Modeling of neural systems *Packages for Neuroscience Datasets *Packages for Neuroscience Education *Packages for Psychophysics
What are we going to do?
We are first planning to try and match as many of the packages from the debian-based neurodebian project as possible excluding the debian-specific packaging related tools and any others for which licensing issues are a problem. The second phase would be to publish a paper outlining the work here again following the neurodebian project paper to give the project some exposure in the research community. A parallel track to these is to continue to publish research using the tools available in NeuroFedora.
Participation
There is no formal process for participating; joining the mailing list, hanging out on IRC, or participating in meetings are all great ways to get involved.
A little self-introduction on the mailing list would be nice, too. And, if you want to, add yourself to our members-section above.
Mailing list
- Join: neurofedora
- Archives: read
IRC
We hang out on irc.freenode.net at #fedora-neuro[?].
Meetings
We shall have them, and see how it goes.
more to come soon.