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< SIGs‎ | SciTech
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= List of scientific/engineering packages =
= List of scientific/engineering packages =


== Astronomy ==


{|
|-
! '''Package Name'''||'''Description'''
|-
| [http://www.eso.org/sci/data-processing/software/cpl/ cpl] || ESO library for automated astronomical data-reduction
|-
| [http://hea-www.harvard.edu/RD/funtools/ funtools] || Minimal FITS library and utilities
|-
| [http://terapix.iap.fr/rubrique.php?id_rubrique=91/ sextractor] || A program that builds a catalogue of objects from an astronomical image.
|-
| [http://www.stellarium.org/ stellarium] || Stellarium is a free open source planetarium for your computer. It shows a realistic sky in 3D, just like what you see with the naked eye, binoculars or a telescope.
|-
| [http://www.eso.org/projects/aot/qfits/ qfits] || A stand-alone general purpose FITS library
|-
| [http://tdc-www.harvard.edu/software/wcstools/ wcstools] || Software utilities to display and manipulate the WCS of a FITS image.
|}


== Mathematics ==
== Biology ==


{|
{|
|-
|-
! '''Package Name'''||'''Description'''
!'''Package Name'''||'''Description'''
|-
| [http://www.cbcb.umd.edu/software/ELPH/ elph] || Tool to find motifs in a set of DNA or protein sequences
|-
|-
| [http://www.oonumerics.org/blitz blitz] || Blitz++ is a C++ class library for matrix scientific computing
| [http://www.cbcb.umd.edu/software/glimmer glimmer] || System for finding genes in microbial DNA
|-
|-
| [http://isthe.com/chongo/tech/comp/calc/ calc] || Calc is an arbitrary precision C-like arithmetic system that is a calculator, an  algorithm-prototyper, and a mathematical research tool.
| [http://hmmer.wustl.edu hmmer] || Profile HMM software for protein sequence analysis
|-
|-
| kpolynome ||KPolynome is a program to calculate mathematical polynomes based on given data coordinates.
| [http://lagan.stanford.edu lagan] || Local, global, and multiple alignment of DNA sequences
|-
|-
| [http://www.brics.dk/mona/ mona] || Mona is a decision procedure for the WS1S and WS2S logics
| [http://www.bioperl.org/ perl-bioperl] || A collection of tools for bioinformatics in Perl
|-
|-
| [http://www.octave.org Octave] || Octave is a Matlab-Clone
| [http://www.biopython.org/ perl-biopython] || A collection of tools for bioinformatics in Python
|-
|-
| [http://www.r-project.org R] || R is a software environment for statistical computing and graphics
| [http://pbil.univ-lyon1.fr/software/seaview.html seaview] || Graphical multiple sequence alignment editor
|-
|-
| [http://scigraphica.sourceforge.net scigraphica] || Scientific application for data analysis and technical graphics
| [http://sibsim4.sourceforge.net SIBsim4] || Align expressed RNA sequences on a DNA template
|}
|}


== Mechanical engineering ==
== Chemistry ==


{|
{|
|-
|-
!'''Package Name'''||'''Description'''
! '''Package Name'''||'''Description'''
|-
| [http://www.nongnu.org/gchemutils/ GChemistry]  || Gnome Chemistry Utils incl. periodic table of the elements, molecular structure viewer and chemical calculator
|-
| [http://www.gromacs.org gromacs] || Gromacs - Fast, Free and Flexible MD
|-
| [http://www.iupac.org/inchi/ inchi] || The IUPAC International Chemical Identifier library
|-
| [http://jmol.sourceforge.net/ jmol] || An open-source Java viewer for chemical structures in 3D
|-
|-
| [http://www.freefem.org/ff++/index.htm FreeFEM] || Free<Fem++ is an implementation of a language dedicated to the finite element method. It enables you to solve Partial Differential Equations (PDE) easily.
| [http://openbabel.sourceforge.net/ openbabel] || Chemistry software file format converter
|-
|-
| [http://www.qcad.org/qcad.html Qcad] ||QCad is an application for computer aided drafting in two dimensions (2d)
| [http://xdrawchem.sourceforge.net/ xdrawchem] || 2D chemical structures drawing tool
|}
|}


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|}
|}


== Chemistry ==
 
 
== Mathematics ==


{|
{|
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! '''Package Name'''||'''Description'''
! '''Package Name'''||'''Description'''
|-
|-
| [http://www.nongnu.org/gchemutils/ GChemistry] || Gnome Chemistry Utils incl. periodic table of the elements, molecular structure viewer and chemical calculator
| [http://www.oonumerics.org/blitz blitz] || Blitz++ is a C++ class library for matrix scientific computing
|-
| [http://isthe.com/chongo/tech/comp/calc/ calc] || Calc is an arbitrary precision C-like arithmetic system that is a calculator, an  algorithm-prototyper, and a mathematical research tool.
|-
|-
| [http://www.gromacs.org gromacs] || Gromacs - Fast, Free and Flexible MD
| kpolynome ||KPolynome is a program to calculate mathematical polynomes based on given data coordinates.
|-
|-
| [http://www.iupac.org/inchi/ inchi] || The IUPAC International Chemical Identifier library
| [http://www.brics.dk/mona/ mona] || Mona is a decision procedure for the WS1S and WS2S logics
|-
|-
| [http://jmol.sourceforge.net/ jmol] || An open-source Java viewer for chemical structures in 3D
| [http://www.octave.org Octave] || Octave is a Matlab-Clone
|-
|-
| [http://openbabel.sourceforge.net/ openbabel] || Chemistry software file format converter
| [http://www.r-project.org R] || R is a software environment for statistical computing and graphics
|-
|-
| [http://xdrawchem.sourceforge.net/ xdrawchem] || 2D chemical structures drawing tool
| [http://scigraphica.sourceforge.net scigraphica] || Scientific application for data analysis and technical graphics
|}
|}


== Astronomy ==
== Mechanical engineering ==


{|
{|
|-
|-
! '''Package Name'''||'''Description'''
!'''Package Name'''||'''Description'''
|-
|-
| [http://www.eso.org/sci/data-processing/software/cpl/ cpl] || ESO library for automated astronomical data-reduction
| [http://www.freefem.org/ff++/index.htm FreeFEM] || Free<Fem++ is an implementation of a language dedicated to the finite element method. It enables you to solve Partial Differential Equations (PDE) easily.
|-
|-
| [http://hea-www.harvard.edu/RD/funtools/ funtools] || Minimal FITS library and utilities
| [http://www.qcad.org/qcad.html Qcad] ||QCad is an application for computer aided drafting in two dimensions (2d)
|-
| [http://terapix.iap.fr/rubrique.php?id_rubrique=91/ sextractor] || A program that builds a catalogue of objects from an astronomical image.
|-
| [http://www.stellarium.org/ stellarium] || Stellarium is a free open source planetarium for your computer. It shows a realistic sky in 3D, just like what you see with the naked eye, binoculars or a telescope.
|-
| [http://www.eso.org/projects/aot/qfits/ qfits] || A stand-alone general purpose FITS library
|-
| [http://tdc-www.harvard.edu/software/wcstools/ wcstools] || Software utilities to display and manipulate the WCS of a FITS image.
|}
|}


== Biology ==
== Physics ==


{|
{|
|-
|-
!'''Package Name'''||'''Description'''
! '''Package Name'''||'''Description'''
|-
|-
| [http://www.cbcb.umd.edu/software/ELPH/ elph] || Tool to find motifs in a set of DNA or protein sequences
| [http://www.gromacs.org gromacs] || Gromacs - Fast, Free and Flexible MD
|-
|-
| [http://www.cbcb.umd.edu/software/glimmer glimmer] || System for finding genes in microbial DNA
| [http://jmol.sourceforge.net/ jmol] || An open-source Java viewer for chemical structures in 3D
|-
|-
| [http://hmmer.wustl.edu hmmer] || Profile HMM software for protein sequence analysis
| [http://openbabel.sourceforge.net/ openbabel] || Chemistry software file format converter
|-
| [http://lagan.stanford.edu lagan] || Local, global, and multiple alignment of DNA sequences
|-
| [http://www.bioperl.org/ perl-bioperl] || A collection of tools for bioinformatics in Perl
|-
| [http://www.biopython.org/ perl-biopython] || A collection of tools for bioinformatics in Python
|-
| [http://pbil.univ-lyon1.fr/software/seaview.html seaview] || Graphical multiple sequence alignment editor
|-
| [http://sibsim4.sourceforge.net SIBsim4] || Align expressed RNA sequences on a DNA template
|}
|}


[[Category:SciTech SIG|Packages list]]
[[Category:SciTech SIG|Packages list]]
[[Category:Packages|SciTech]]
[[Category:Packages|SciTech]]

Revision as of 11:23, 26 October 2008

List of scientific/engineering packages

Astronomy

Package Name Description
cpl ESO library for automated astronomical data-reduction
funtools Minimal FITS library and utilities
sextractor A program that builds a catalogue of objects from an astronomical image.
stellarium Stellarium is a free open source planetarium for your computer. It shows a realistic sky in 3D, just like what you see with the naked eye, binoculars or a telescope.
qfits A stand-alone general purpose FITS library
wcstools Software utilities to display and manipulate the WCS of a FITS image.

Biology

Package Name Description
elph Tool to find motifs in a set of DNA or protein sequences
glimmer System for finding genes in microbial DNA
hmmer Profile HMM software for protein sequence analysis
lagan Local, global, and multiple alignment of DNA sequences
perl-bioperl A collection of tools for bioinformatics in Perl
perl-biopython A collection of tools for bioinformatics in Python
seaview Graphical multiple sequence alignment editor
SIBsim4 Align expressed RNA sequences on a DNA template

Chemistry

Package Name Description
GChemistry Gnome Chemistry Utils incl. periodic table of the elements, molecular structure viewer and chemical calculator
gromacs Gromacs - Fast, Free and Flexible MD
inchi The IUPAC International Chemical Identifier library
jmol An open-source Java viewer for chemical structures in 3D
openbabel Chemistry software file format converter
xdrawchem 2D chemical structures drawing tool

Electrical engineering

Package Name Description
The Geda Suite The complete suite for Electrical schematic and simulation
geda-docs
geda-examples
geda-gattrib
geda-gnetlist
geda-gschem
geda-gsymcheck
geda-symbols
geda-utils		 Documentation for gEDA
Circuit examples for gEDA
Attribute editor for gEDA
Netlister for the gEDA project
Electronics schematics editor
Symbol checker for electronics schematics editor
A bunch of symbols of electronic devices used by gschem.
Utilities for gEDA
gresistor To allow for identification, resistors are usually marked with colored bands. Often refereed to as color codes, these markings are indicative of their resistance, tolerance and temperature coefficient.
gnucap GNU Circuit Analysis Package
ktechlab Development and simulation of microcontrollers and electronic circuits
Ngspice A mixed level/signal circuit simulator
pcb PCB is an interactive printed circuit board editor for the X window system.
toped IC Layout Editor
xcircuit Xcircuit is a general-purpose drawing program and also a specific-purpose CAD program for circuit schematic drawing and schematic capture.
qucs Qucs is a circuit simulator with graphical user interface. The software aims to support all kinds of circuit simulation types, e.g. DC, AC, S-parameter and harmonic balance analysis.
freehdl A project to develop a free, open source, GPL'ed VHDL simulator for Linux.


Mathematics

Package Name Description
blitz Blitz++ is a C++ class library for matrix scientific computing
calc Calc is an arbitrary precision C-like arithmetic system that is a calculator, an algorithm-prototyper, and a mathematical research tool.
kpolynome KPolynome is a program to calculate mathematical polynomes based on given data coordinates.
mona Mona is a decision procedure for the WS1S and WS2S logics
Octave Octave is a Matlab-Clone
R R is a software environment for statistical computing and graphics
scigraphica Scientific application for data analysis and technical graphics

Mechanical engineering

Package Name Description
FreeFEM Free<Fem++ is an implementation of a language dedicated to the finite element method. It enables you to solve Partial Differential Equations (PDE) easily.
Qcad QCad is an application for computer aided drafting in two dimensions (2d)

Physics

Package Name Description
gromacs Gromacs - Fast, Free and Flexible MD
jmol An open-source Java viewer for chemical structures in 3D
openbabel Chemistry software file format converter
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