Documentation Scientific and Technical Beat

Fedora 12 includes a range of packages for science and mathematics.

R

R and many of it's subpackages have been updated to the latest versions. There are a large number of new features which are described in detail on the project's mailing list: https://stat.ethz.ch/pipermail/r-announce/2009/thread.html.

Changed Packages

Package	Fedora 11	Fedora 12	Upstream URL
GMT	4.4.0	4.5.0	http://gmt.soest.hawaii.edu/
GMT-coastlines	1.10	2.0	http://gmt.soest.hawaii.edu/
GMT-coastlines-all	1.10	2.0	http://gmt.soest.hawaii.edu/
GMT-coastlines-full	1.10	2.0	http://gmt.soest.hawaii.edu/
GMT-coastlines-high	1.10	2.0	http://gmt.soest.hawaii.edu/
GMT-common	4.4.0	4.5.0	http://gmt.soest.hawaii.edu/
R	2.9.0	2.9.2	http://www.r-project.org
R-BSgenome.Celegans.UCSC.ce2	1.2.0	1.3.13	http://www.bioconductor.org/packages/2.0/data/annotation/html/BSgenome.Celegans.UCSC.ce2.html
R-Biobase	2.2.2	2.4.1	http://bioconductor.org/packages/2.3/bioc/html/Biobase.html
R-BufferedMatrix	1.6.0	1.8.0	http://bioconductor.org/packages/release/bioc/html/BufferedMatrix.html
R-GeneR	2.13.1	2.14.0	http://www.bioconductor.org/packages/2.4/bioc/html/GeneR.html
R-IRanges	1.1.55	1.2.3	http://bioconductor.org/packages/2.4/bioc/html/IRanges.html
R-RUnit	0.4.21	0.4.22	http://cran.r-project.org/web/packages/RUnit/index.html
R-affyio	1.10.1	1.12.0	http://bioconductor.org/packages/2.3/bioc/html/affyio.html
R-core	2.9.0	2.9.2	http://www.r-project.org
R-devel	2.9.0	2.9.2	http://www.r-project.org
R-hgu95av2probe	2.0.0	2.4.0	http://www.bioconductor.org/packages/2.1/data/annotation/html/hgu95av2probe.html
R-java	2.9.0	2.9.2	http://www.r-project.org
R-java-devel	2.9.0	2.9.2	http://www.r-project.org
R-mAr	1.1	1.1.1	http://cran.r-project.org/contrib
R-multcomp	1.0	1.1	http://cran.r-project.org/web/packages/multcomp/index.html
R-qtl	1.10	1.11	http://cran.r-project.org/web/packages/qtl/
R-qvalue	1.16.0	1.18.0	http://bioconductor.org/packages/2.3/bioc/html/qvalue.html
R-systemfit	1.0	1.1	http://www.systemfit.org/
R-wavethresh	2.2	2.2.11	http://cran.r-project.org/contrib/main/Descriptions/wavethresh.html
alt-ergo	0.8	0.9	http://alt-ergo.lri.fr
boinc-client	6.4.7	6.6.37	http://boinc.berkeley.edu/
boinc-manager	6.4.7	6.6.37	http://boinc.berkeley.edu/
coq	8.1pl4	8.2pl1	http://coq.inria.fr/
coq-coqide	8.1pl4	8.2pl1	http://coq.inria.fr/
coq-doc	8.1pl4	8.2pl1	http://coq.inria.fr/
coq-emacs	8.1pl4	8.2pl1	http://coq.inria.fr/
electric	8.08	8.09	http://www.staticfreesoft.com/
emacs-gnuplot	4.2.4	4.2.5	http://www.gnuplot.info/
emacs-gnuplot-el	4.2.4	4.2.5	http://www.gnuplot.info/
fet	5.7.7	5.10.2	http://lalescu.ro/liviu/fet
fityk	0.8.1	0.8.8	http://fityk.sourceforge.net/
freehdl	0.0.6	0.0.7	http://www.freehdl.seul.org/
gabedit	2.1.17	2.2.4	http://gabedit.sourceforge.net/home.html
genius	1.0.3	1.0.7	http://www.jirka.org/genius.html
genius-devel	1.0.3	1.0.7	http://www.jirka.org/genius.html
geos	3.0.3	3.1.1	http://geos.refractions.net
gerbv	2.2.0	2.3.0	http://gerbv.sourceforge.net/
gmp-ecm	6.2.1	6.2.3	http://gforge.inria.fr/projects/ecm/
gnome-chemistry-utils	0.10.4	0.10.5	http://www.nongnu.org/gchemutils/
gnome-genius	1.0.3	1.0.7	http://www.jirka.org/genius.html
gnuplot	4.2.4	4.2.5	http://www.gnuplot.info/
gnuplot-common	4.2.4	4.2.5	http://www.gnuplot.info/
gnuplot-doc	4.2.4	4.2.5	http://www.gnuplot.info/
gnuplot-minimal	4.2.4	4.2.5	http://www.gnuplot.info/
gnuradio	3.1.3	3.2.2	http://www.gnuradio.org
gnuradio-devel	3.1.3	3.2.2	http://www.gnuradio.org
gnuradio-doc	3.1.3	3.2.2	http://www.gnuradio.org
gnuradio-examples	3.1.3	3.2.2	http://www.gnuradio.org
gonvert	0.2.19	0.2.20	http://unihedron.com/projects/gonvert
gtkwave	3.2.1	3.2.2	http://gtkwave.sourceforge.net/
kicad	2007.07.09	2009.07.07	http://www.lis.inpg.fr/realise_au_lis/kicad/
kst	1.7.0	1.8.0	http://kst.kde.org/
kst-devel	1.7.0	1.8.0	http://kst.kde.org/
kst-docs	1.7.0	1.8.0	http://kst.kde.org/
kst-fits	1.7.0	1.8.0	http://kst.kde.org/
kst-netcdf	1.7.0	1.8.0	http://kst.kde.org/
linsmith	0.99.11	0.99.12	http://jcoppens.com/soft/linsmith/index.en.php
magic	7.5.169	8.0.54	http://opencircuitdesign.com/magic/index.html
mapnik	0.5.2	0.6.1	http://mapnik.org/
maxima	5.17.1	5.19.2	http://maxima.sourceforge.net/
maxima-gui	5.17.1	5.19.2	http://maxima.sourceforge.net/
maxima-runtime-clisp	5.17.1	5.19.2	http://maxima.sourceforge.net/
maxima-runtime-cmucl	5.17.1	5.19.2	http://maxima.sourceforge.net/
maxima-runtime-sbcl	5.17.1	5.19.2	http://maxima.sourceforge.net/
maxima-src	5.17.1	5.19.2	http://maxima.sourceforge.net/
mrpt-apps	0.6.5	0.7.1	http://babel.isa.uma.es/mrpt/
ncl	5.1.0	5.1.1	http://www.ncl.ucar.edu
ncl-common	5.1.0	5.1.1	http://www.ncl.ucar.edu
nco	3.9.7	3.9.8	http://nco.sourceforge.net/
netcdf	4.0.0	4.0.1	http://my.unidata.ucar.edu/content/software/netcdf/index.html
ngspice	18	19	http://ngspice.sourceforge.net/
octave	3.0.5	3.2.2	http://www.octave.org
octave-forge	20080831	20090607	http://octave.sourceforge.net
paraview	3.4.0	3.6.1	http://www.paraview.org/
paraview-data	3.4.0	3.6.1	http://www.paraview.org/
paraview-devel	3.4.0	3.6.1	http://www.paraview.org/
paraview-doc	3.4.0	3.6.1	http://www.paraview.org/
paraview-mpi	3.4.0	3.6.1	http://www.paraview.org/
perl-Verilog	3.121	3.212	http://www.veripool.org/wiki/verilog-perl
picviz	0.5	0.6	http://www.wallinfire.net/picviz
picviz-gui	0.5	0.6	http://www.wallinfire.net/picviz
picviz-plugin-pngcairo	0.5	0.6	http://www.wallinfire.net/picviz
plplot	5.9.2	5.9.4	http://plplot.sourceforge.net/
polyxmass-bin	0.9.7	0.9.8	http://www.polyxmass.org/
pygrace	0.3	0.4	http://www.its.caltech.edu/~mmckerns/software.html
qgis	1.0.1	1.0.2	http://qgis.org/
qgis-grass	1.0.1	1.0.2	http://qgis.org/
qgis-python	1.0.1	1.0.2	http://qgis.org/
qgis-theme-classic	1.0.1	1.0.2	http://qgis.org/
qgis-theme-gis	1.0.1	1.0.2	http://qgis.org/
qgis-theme-nkids	1.0.1	1.0.2	http://qgis.org/
qucs	0.0.14	0.0.15	http://qucs.sourceforge.net/
scidavis	0.2.1	0.2.3	http://scidavis.sourceforge.net/
scitools	0.4	0.6	http://code.google.com/p/scitools/
scitools-extras	0.4	0.6	http://code.google.com/p/scitools/
sdcc	2.8.0	2.9.0	http://sdcc.sourceforge.net/
sdcc-libc-sources	2.8.0	2.9.0	http://sdcc.sourceforge.net/
toped	0.9.2	0.9.4	http://www.toped.org.uk
usrp	3.1.3	3.2.2	http://www.gnuradio.org
usrp-devel	3.1.3	3.2.2	http://www.gnuradio.org
vtk-examples	5.2.1	5.4.2	http://vtk.org/
vtk-testing	5.2.1	5.4.2	http://vtk.org/
wgrib	1.8.0.12u	1.8.0.13b	http://www.cpc.ncep.noaa.gov/products/wesley/wgrib.html
wgrib2	1.7.8g	1.8.1	http://www.cpc.ncep.noaa.gov/products/wesley/wgrib2/
wxMaxima	0.7.6	0.8.2	http://wxmaxima.sourceforge.net/
xcircuit	3.4.30	3.6.161	http://opencircuitdesign.com/xcircuit
xgridedit	4.4.0	4.5.0	http://gmt.soest.hawaii.edu/

320 packages, 113 changed, 207 unchanged.