SIGs/NeuroFedora/PackageSet

There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general.

Please add software that needs to be packaged to the appropriate table with the status "needs packaging". If a package is in a COPR repository, a status of "COPR" can be used. Once a package is in review, the status should be "In review", and of course, once a package is in the repositories, the final status would be "Packaged".

Please feel free to reorganise the tables as required.

Packages for Distributed Computing

Package	Summary	Status	Comment
example		Packaged

Packages for Image analysis

Package	Summary	Status	Comment
ctk	The CTK core library for Image analysis	Packaged
dcm2niix	Conver neuroimaging data from NIFTI format to DICOM	Packaged
isis	Framework to access a large variety of image libraries	Needs import
libminc	Library to work with the MINC file format	Packaged
python-nibabel	Python package to access a cacophony of neuro-imaging file formats	Packaged
python-pydicom	Read, modify, and write DICOM files with Python	Packaged
rubygem-nifti	Pure-ruby library for handling NIfTI data in Ruby	Packaged

Packages for Data Analysis

Package	Summary	Status	Comment
python-mne	Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis	Packaged
python-pyactivetwo	Python library for reading signal from BioSemi ActiveTwo EEG device	Packaged

Packages for Modeling of neural systems

Package	Summary	Status	Comment
NEST neural simulator	The neural simulation tool	In review, needs work 1273579
Brian	The Brian spiking neural simulator	Needs packaging, dead review 1098754
PyNN	A Python package for simulator independent specification of neuronal network models	Review ready, needs deps 1150105
The NEURON simulator	Empirically based simulations of neurons and networks of neurons	Needs packaging, dead review 1249094
example		Packaged

Misc Libraries/Utilities

Package	Summary	Status	Comment
python-neo	Represent electrophysiology data in Python	Packaged
DiffusionKurtosisFit	Reconstruct Diffusion Kurtosis tensor from Diffusion Weighted MRI	Packaged
getdp	Finite element solver	Packaged
gifticlib	Refernce IO implementation and tools of the GIFTI XML based file format for cortical surface data	Packaged
nipy-data	Test data and brain templates for nipy	Packaged
openigtlink	Reference implementation of OpenIGTLink: a set of message formats and protocols used for data exchange over a local area network	Packaged
petpvc	Tools for partial volume correction (PVC) in positron emission tomography (PET)	Packaged
python-amico	Relationships backed by Redis	Packaged
python-baker	Easy, powerful access to Python functions from the command line	Packaged
python-citeproc-py	Citations and bibliography formatter	Packaged
python-gradunwarp	Gradient Unwarping	Packaged
python-h5io	Read and write simple Python objects using HDF5	Packaged
python-interfile	Python module for read/write/parse interfile	Packaged
python-klusta	Spike detection and automatic clustering for spike sorting	Packaged
python-lazyarray	A lazily-evaluated numerical array class	Packaged
python-moss	Assorted utilities for neuroimaging and cognitive science	Packaged
python-nixio	Python bindings for NIX, the Neuroscience Exchange Format	Packaged
python-pydotplus	Python interface to Graphviz's Dot language	Packaged
python-PyLink	Universal communication interface using File-Like API	Packaged
python-pyoptical	Pure Python interface to OptiCAL	Packaged
python-pyriemann	Covariance matrices manipulaton and Biosignal classification	Packaged
python-pyxid	Python library for interfacing with Cedrus XID and StimTracker devices	Packaged
python-quantities	Support for physical quantities with units, based on numpy	Packaged
python-simplewrap	Easy to use wrappers generator for C libraries based on ctypes	Packaged
python-tabulate	Pretty-print tabular data in Python, a library and a command-line utility	Packaged
python-transforms3d	3 dimensional spatial transformations	Packaged
texlive	The LaTeX typesetting system for academic writing	Packaged
python-grabbit	Get grabby with file trees!	Packaged
python-cma	Covariance Matrix Adaptation Evolution Strategy numerical optimizer	Packaged