This page is Fedora Medical SIG's COVID-19 page.
As the COVID-19 is of many people's interest, the page is created for people who want to contribute or do RPM packaging.
Analysis
=== Focusing projects
We list up the COVID-19 analysis focusing projects. This is a a top-down approach to find the areas.
- COVID19 Virtual Biohackathon 2020: Wiki Home Learning, Kick-off meeting video, Wrap-up meeting video.
- CodeVsCovid19
Projects used in COVID-19
We list up the projects used in the COVID-19. This is a bottom-up approach to find the areas.
nf-core
nf-core is a collection of Nextflow pipelines. We refer it to see the actual analysis workflow to identify the used bio tools projects.
Talking people in the project, nf-core/nanoseq, nf-core/artic and nf-core/viralrecon are primarily important.
- nf-core/nanoseq
- nf-core/artic (in development)
- nf-core/viralrecon (in development)
Following pipelines could be certainly relevant.
- Single-cell analysis: nf-core/scrnaseq, nf-core/smartseq2
- Whole-genome sequencing analysis: nf-core/sarek
- Metagenomics analysis: nf-core/mag
- Investigations into the immune response: nf-core/bcellmagic
As almost any molecular biology technique can be used to look into some aspect of COVID-19, virtually all the nf-core pipeline can be relevant.
Packages list
Distributed Computing
The distributed computing projects are to enable people to help COVID-19 analysis by their computer resources.
Open Hardware
According to [https://opensource.com/article/20/3/open-hardware-covid19
this article], there are open source hardware projects related to
- Ventilator
- Llabware, consumables, reagents
- Polymerase chain reaction (PCR) device