archimedes
archimedes is a 2D Quantum Monte Carlo simulator for semiconductor devices. New features for Fedora 17 include:
- Quantum Effective Potential modified
- Bohm Potential Model implemented
- Calibrated Bohm Model implemented
- Density Gradient corrected and tested
- Full effective potential model implemented
- New tests created
- Parabolic, Kane and Full band checked
- Full band Parameters for all materials
- Scattering phonons can be set to ON and OFF
- Support to Full Band approach
gnome-chemistry-utils
gnome-chemistry-utils has been updated to the latest development release.
Changes include:
- GChem3d:
- Import from InChI or SMILES.
- Export to GChemPaint and GChemCalc.
- Generates InChI, InChiKey and SMILES.
- Add access to databases.
- GChemPaint:
- Brackets inside a molecule accept a stoichiometry coefficient.
- GCrystal:
- Use multiple selection in atoms and lines dialogs.
- GSpectrum:
- Allow markup in combo boxes and axes titles.
- Goffice component:
- Add support for crystal structures.
gnuplot
In addition to a number of bug fixes, gnuplot 4.4.4 includes:
- boxxyerrors plot style now allows variable color
- splot with pm3d now allows variable rgb color
- "nonuniform matrix" indicates ascii data with explicit x, y
- columnhead(N) is a string-valued function, not a keyword
- Demarcate plots in svg output using <g id="Plot_#"><title>...
- xticlabels() works for binary data files as well as ascii
- "set key maxrows" now applies to 3D plots as well as 2D
lapack
lapack has been updated to 3.4.0,
- xGEQRT: QR factorization (improved interface). xGEQRT is analogous to xGEQRF with a modified interface which enables better performance when the blocked reflectors need to be reused. The companion subroutines xGEMQRT apply the reflectors.
- xGEQRT3: recursive QR factorization. The recursive QR factorization enables cache-oblivious and enables high performance on tall and skinny matrices.
- xTPQRT: Communication-Avoiding QR sequential kernels. These subroutines are useful for updating a QR factorization and are used in sequential and parallel Communication Avoiding QR. These subroutines support the general case Triangle on top of Pentagon which includes as special cases so-called Triangle on top of Triangle and Triangle on top of Square. This is the right-looking version of the subroutines and the subroutines are blocked. The T matrices and the block size are part of the interface. The companion subroutines xTPMQRT apply the reflectors.
- LAPACKE - Standard C language APIs for LAPACK. Since LAPACK 3.3.0, LAPACK includes new C interfaces. With the LAPACK 3.4.0 release, LAPACKE is directly integrated within the LAPACK library and has been enriched by the full set of LAPACK subroutines.
Refer to http://www.netlib.org/lapack/lapack-3.4.0.html for more details.
libmatheval
Library for parsing and evaluating symbolic expressions input as text
Old Version: 1.1.5 -> New Version: 1.1.8
Project site: (http://www.gnu.org/software/libmatheval/)
mapnik
Version 2.0.0 of mapnik is a major upgrade with numerous changes. Go to https://github.com/mapnik/mapnik/wiki/Release2.0.0 for complete details.
mathomatic
Small, portable symbolic math program
Old Version: 15.6.2 -> New Version: 15.7.3
Project site: (http://www.mathomatic.org/math/)
mathomatic-tools
Various small math tools from mathomatic
Old Version: 15.6.2 -> New Version: 15.7.3
Project site: (http://www.mathomatic.org/math/)
maxima
Symbolic Computation Program
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
maxima-gui
Tcl/Tk GUI interface for maxima
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
maxima-runtime-clisp
Maxima compiled with clisp
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
maxima-runtime-cmucl
Maxima compiled with CMUCL
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
maxima-runtime-gcl
Maxima compiled with GCL
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
maxima-runtime-sbcl
Maxima compiled with SBCL
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
maxima-src
maxima lisp source code
Old Version: 5.25.0 -> New Version: 5.26.0
Project site: (http://maxima.sourceforge.net/)
numpy
A fast multidimensional array facility for Python
Old Version: 1.6.0 -> New Version: 1.6.1
Project site: (http://numeric.scipy.org/)
octave
A high-level language for numerical computations
Old Version: 3.4.2 -> New Version: 3.6.0
Project site: (http://www.octave.org)
openbabel
Chemistry software file format converter
Old Version: 2.3.0 -> New Version: 2.3.1
Project site: (http://openbabel.org/)
paraview
Parallel visualization application
Old Version: 3.10.1 -> New Version: 3.12.0
Project site: (http://www.paraview.org/)
paraview-data
Data files for ParaView
Old Version: 3.10.1 -> New Version: 3.12.0
Project site: (http://www.paraview.org/)
paraview-devel
Old Version: -> New Version: 3.12.0
Project site: ()
paw
A program for the analysis and presentation of data
Old Version: 2006 -> New Version:
Project site: (http://cernlib.web.cern.ch/cernlib/)
paw-g77
A program for the analysis and presentation of data
Old Version: 2006 -> New Version:
Project site: (http://cernlib.web.cern.ch/cernlib/)
paw-gfortran
A program for the analysis and presentation of data
Old Version: 2006 -> New Version:
Project site: (http://cernlib.web.cern.ch/cernlib/)
plplot
Library of functions for making scientific plots
Old Version: 5.9.8 -> New Version: 5.9.9
Project site: (http://plplot.sourceforge.net/)
pspp
A program for statistical analysis of sampled data
Old Version: 0.6.2 -> New Version: 0.7.8
Project site: (http://www.gnu.org/software/pspp/)
python-fiat
Generation of arbitrary order instances of the Lagrange elements
Old Version: 0.9.9 -> New Version: 1.0.0
Project site: (http://www.fenicsproject.org)
python-instant
Python module for instant inlining of C and C++ code
Old Version: 0.9.9 -> New Version: 1.0.0
Project site: (http://www.fenicsproject.org)
qgis
A user friendly Open Source Geographic Information System
Old Version: 1.7.1 -> New Version: 1.7.3
Project site: (http://www.qgis.org)
qgis-grass
GRASS Support Libraries for Quantum GIS
Old Version: 1.7.1 -> New Version: 1.7.3
Project site: (http://www.qgis.org)
qgis-python
Python integration and plug-ins for Quantum GIS
Old Version: 1.7.1 -> New Version: 1.7.3
Project site: (http://www.qgis.org)
qtgpsc
A client for the gpsd GPS server
Old Version: 0.2.3 -> New Version: 0.3.1
Project site: (http://www.navlost.eu/survey/gpsd/)
R
A language for data analysis and graphics
Old Version: 2.13.1 -> New Version: 2.14.1
Project site: (http://www.r-project.org)
R-affyio
Tools for parsing Affymetrix data files
Old Version: 1.20.0 -> New Version: 1.22.0
Project site: (http://bioconductor.org/packages/release/bioc/html/affyio.html)
R-Biobase
Base functions for Bioconductor
Old Version: 2.12.2 -> New Version: 2.14.0
Project site: (http://bioconductor.org/packages/release/bioc/html/Biobase.html)
R-BufferedMatrix
A matrix data storage object method from bioconductor
Old Version: 1.16.0 -> New Version: 1.18.0
Project site: (http://bioconductor.org/packages/release/bioc/html/BufferedMatrix.html)
R-core
The minimal R components necessary for a functional runtime
Old Version: 2.13.1 -> New Version: 2.14.1
Project site: (http://www.r-project.org)
R-devel
Files for development of R packages
Old Version: 2.13.1 -> New Version: 2.14.1
Project site: (http://www.r-project.org)
R-GeneR
R for genes and sequences analysis
Old Version: 2.22.0 -> New Version: 2.24.0
Project site: (http://bioconductor.org/packages/release/bioc/html/GeneR.html)
R-hgu95av2probe
Probe sequence data for microarrays of type hgu95av2
Old Version: 2.8.0 -> New Version: 2.9.0
Project site: (http://www.bioconductor.org/packages/release/data/annotation/html/hgu95av2probe.html)
R-IRanges
Low-level containers for storing sets of integer ranges
Old Version: 1.10.4 -> New Version: 1.12.1
Project site: (http://bioconductor.org/packages/release/bioc/html/IRanges.html)
R-java
R with Fedora provided Java Runtime Environment
Old Version: 2.13.1 -> New Version: 2.14.1
Project site: (http://www.r-project.org)
R-java-devel
Development package for use with Java enabled R components
Old Version: 2.13.1 -> New Version: 2.14.1
Project site: (http://www.r-project.org)
R-lmtest
Testing Linear Regression Models for R
Old Version: 0.9 -> New Version: 0.9.29
Project site: (http://cran.r-project.org/web/packages/lmtest/index.html)
R-mvtnorm
Multivariate normal and T distribution R Package
Old Version: 0.9 -> New Version: 0.9.9991
Project site: (http://cran.r-project.org/web/packages/mvtnorm/index.html)
roundup
Simple and flexible issue-tracking system
Old Version: 1.4.15 -> New Version: 1.4.18
Project site: (http://roundup.sourceforge.net/)
R-qcc
R-qcc is new to Fedora. R-qcc is an R package which provides a rich set of quality control and statistical process control tools, including:
- Plot Shewhart quality control charts
- Plot Cusum and EMWA charts for continuous data
- Draw operating characteristic curves
- Perform process capability analysis
- Draw Pareto charts and Ishikawa diagrams
R-qtl
Tools for analyzing QTL experiments
Old Version: 1.21.2 -> New Version: 1.22.21
Project site: (http://www.rqtl.org/)
R-qvalue
Q-value estimation for false discovery rate control
Old Version: 1.26.0 -> New Version: 1.28.0
Project site: (http://bioconductor.org/packages/release/bioc/html/qvalue.html)
R-RSQLite
SQLite database interface for R
Old Version: 0.9.1 -> New Version: 0.10.0
Project site: (http://cran.r-project.org/web/packages/RSQLite/index.html)
R-systemfit
Simultaneous Equation Estimation R Package
Old Version: 1.1 -> New Version: 1.1.11
Project site: (http://r-forge.r-project.org/projects/systemfit/)
R-zoo
Z's ordered observations for irregular time series
Old Version: 1.6 -> New Version: 1.7.6
Project site: (http://cran.r-project.org/web/packages/zoo/index.html)
seaview
Graphical multiple sequence alignment editor
Old Version: 4.2.12 -> New Version: 4.3.2
Project site: (http://pbil.univ-lyon1.fr/software/seaview.html)
tcd-utils
TCD (Tide Constituent Database) Utils
Old Version: 20080820 -> New Version: 20120115
Project site: (http://www.flaterco.com/xtide/)
veusz
GUI scientific plotting package
Old Version: 1.12 -> New Version: 1.14
Project site: (http://home.gna.org/veusz/)
vtk-examples
Examples for VTK
Old Version: 5.6.1 -> New Version: 5.8.0
Project site: (http://vtk.org/)
vtk-testing
Testing programs for VTK
Old Version: 5.6.1 -> New Version: 5.8.0
Project site: (http://vtk.org/)
wgrib
Manipulate, inventory and decode GRIB files
Old Version: 1.8.1.0h -> New Version: 1.8.1.2a
Project site: (http://www.cpc.ncep.noaa.gov/products/wesley/wgrib.html)
wgrib2
Manipulate, inventory and decode GRIB2 files
Old Version: 1.9.4 -> New Version: 1.9.5.1
Project site: (http://www.cpc.ncep.noaa.gov/products/wesley/wgrib2/)
why
Software verification platform
Old Version: 2.29 -> New Version: 2.30
Project site: (http://why.lri.fr/)
why-coq
Libraries for interfacing Coq with Why
Old Version: 2.29 -> New Version: 2.30
Project site: (http://why.lri.fr/)
why-gwhy
IDE for Why software verification platform
Old Version: 2.29 -> New Version: 2.30
Project site: (http://why.lri.fr/)
xtide
Calculate tide all over the world
Old Version: 2.12 -> New Version: 2.12.1
Project site: (http://www.flaterco.com/xtide/)
xtide-common
Xtide common files
Old Version: 2.12 -> New Version: 2.12.1
Project site: (http://www.flaterco.com/xtide/)