From Fedora Project Wiki
< SIGs | NeuroFedora
There is a good amount of overlap with other SIGs and Spins and some categories of NeuroFedora can be seen as BigData, Fedora-Medical, ML, Octave and SciTech in general.
Please add software that needs to be packaged to the appropriate table with the status "needs packaging". If a package is in a COPR repository, a status of "COPR" can be used. Once a package is in review, the status should be "In review", and of course, once a package is in the repositories, the final status would be "Packaged".
Please feel free to reorganise the tables as required.
If you use a package that is not available in Fedora yet, please feel free to e-mail us and we'll look into providing it. You can either contact us on the mailing list, the IRC channel, or e-mail us privately too!
Packages for Distributed Computing
| Package | Summary | Status | Comment |
|---|---|---|---|
| example | Packaged |
Packages for Image analysis
| Package | Summary | Status | Comment |
|---|---|---|---|
| ctk | The CTK core library for Image analysis | Packaged | |
| dcm2niix | Conver neuroimaging data from NIFTI format to DICOM | Packaged | |
| isis | Framework to access a large variety of image libraries | Needs import | |
| libminc | Library to work with the MINC file format | Packaged | |
| python-nibabel | Python package to access a cacophony of neuro-imaging file formats | Packaged | |
| python-pydicom | Read, modify, and write DICOM files with Python | Packaged | |
| rubygem-nifti | Pure-ruby library for handling NIfTI data in Ruby | Packaged |
Packages for Data Analysis
| Package | Summary | Status | Comment |
|---|---|---|---|
| python-mne | Magnetoencephalography (MEG) and Electroencephalography (EEG) data analysis | Packaged | |
| python-pyactivetwo | Python library for reading signal from BioSemi ActiveTwo EEG device | Packaged |
Packages for Modeling of neural systems
| Package | Summary | Status | Comment |
|---|---|---|---|
| NEST neural simulator | The neural simulation tool | In review, needs work 1273579 | |
| Brian | The Brian spiking neural simulator | Needs packaging, dead review 1098754 | |
| PyNN | A Python package for simulator independent specification of neuronal network models | Review ready, needs deps 1150105 | |
| The NEURON simulator | Empirically based simulations of neurons and networks of neurons | Needs packaging, dead review 1249094 | |
| example | Packaged |
Misc Libraries/Utilities
| Package | Summary | Status | Comment |
|---|---|---|---|
| python-neo | Represent electrophysiology data in Python | Packaged | |
| DiffusionKurtosisFit | Reconstruct Diffusion Kurtosis tensor from Diffusion Weighted MRI | Packaged | |
| getdp | Finite element solver | Packaged | |
| gifticlib | Refernce IO implementation and tools of the GIFTI XML based file format for cortical surface data | Packaged | |
| nipy-data | Test data and brain templates for nipy | Packaged | |
| openigtlink | Reference implementation of OpenIGTLink: a set of message formats and protocols used for data exchange over a local area network | Packaged | |
| petpvc | Tools for partial volume correction (PVC) in positron emission tomography (PET) | Packaged | |
| python-amico | Relationships backed by Redis | Packaged | |
| python-baker | Easy, powerful access to Python functions from the command line | Packaged | |
| python-citeproc-py | Citations and bibliography formatter | Packaged | |
| python-gradunwarp | Gradient Unwarping | Packaged | |
| python-h5io | Read and write simple Python objects using HDF5 | Packaged | |
| python-interfile | Python module for read/write/parse interfile | Packaged | |
| python-klusta | Spike detection and automatic clustering for spike sorting | Packaged | |
| python-lazyarray | A lazily-evaluated numerical array class | Packaged | |
| python-moss | Assorted utilities for neuroimaging and cognitive science | Packaged | |
| python-nixio | Python bindings for NIX, the Neuroscience Exchange Format | Packaged | |
| python-pydotplus | Python interface to Graphviz's Dot language | Packaged | |
| python-PyLink | Universal communication interface using File-Like API | Packaged | |
| python-pyoptical | Pure Python interface to OptiCAL | Packaged | |
| python-pyriemann | Covariance matrices manipulaton and Biosignal classification | Packaged | |
| python-pyxid | Python library for interfacing with Cedrus XID and StimTracker devices | Packaged | |
| python-quantities | Support for physical quantities with units, based on numpy | Packaged | |
| python-simplewrap | Easy to use wrappers generator for C libraries based on ctypes | Packaged | |
| python-tabulate | Pretty-print tabular data in Python, a library and a command-line utility | Packaged | |
| python-transforms3d | 3 dimensional spatial transformations | Packaged | |
| texlive | The LaTeX typesetting system for academic writing | Packaged | |
| python-grabbit | Get grabby with file trees! | Packaged | |
| python-cma | Covariance Matrix Adaptation Evolution Strategy numerical optimizer | Packaged |